GgaEX0028613 @ galGal3
Exon Skipping
Gene
ENSGALG00000014419 | Q90XG3_CHICK
Description
NA
Coordinates
chr4:77813628-77955948:-
Coord C1 exon
chr4:77955877-77955948
Coord A exon
chr4:77824806-77824877
Coord C2 exon
chr4:77813628-77813699
Length
72 bp
Sequences
Splice sites
3' ss Seq
TTTAATCTTCTTTTTCATAGTGA
3' ss Score
7.06
5' ss Seq
TCTGTAAGT
5' ss Score
7.96
Exon sequences
Seq C1 exon
GCGCCTAAACAGAAATAACCTCCAGTTGCTTTCTGAACTGCTCTTTCTGGGGACGCCGAAGTTATACAGGCT
Seq A exon
TGATCTTAGTGAAAATCAGATTCAAGCCATACCCAGGAAGGCATTTCGTGGAGCAGTAGACATAAAAAATCT
Seq C2 exon
GCAACTGGATTACAACCAGATCAGCTGTATTGAAGATGGGGCATTTAGGGCTCTGCGCGACCTGGAAGTGCT
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000014419_MULTIEX2-5/5=3-C2
Average complexity
S
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF138551=LRR_8=PD(11.5=28.0)
A:
PF138551=LRR_8=PU(8.2=20.0)
C2:
PF138551=LRR_8=FE(39.3=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCGCCTAAACAGAAATAACCTCC
R:
CACTTCCAGGTCGCGCAG
Band lengths:
142-214
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]