RnoEX0083465 @ rn6
Exon Skipping
Gene
ENSRNOG00000003840 | Slit2
Description
slit guidance ligand 2 [Source:RGD Symbol;Acc:69310]
Coordinates
chr14:66966161-67154422:-
Coord C1 exon
chr14:67154351-67154422
Coord A exon
chr14:66977922-66977993
Coord C2 exon
chr14:66966161-66966232
Length
72 bp
Sequences
Splice sites
3' ss Seq
CTCCTTTATTTTGTTTCTAGTGA
3' ss Score
7.6
5' ss Seq
TCTGTGAGT
5' ss Score
7
Exon sequences
Seq C1 exon
GCGTTTAAACAGAAATAACCTTCAGTTGTTTCCTGAGCTGCTGTTTCTTGGGACTGCGAAGCTCTACCGGCT
Seq A exon
TGATCTCAGTGAAAATCAGATTCAAGCAATTCCAAGGAAGGCTTTCCGTGGTGCAGTTGACATTAAAAATCT
Seq C2 exon
GCAGTTGGATTACAACCAGATCAGCTGCATTGAAGATGGGGCATTCCGAGCTCTGCGAGATCTGGAAGTGCT
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000003840-'4-9,'4-8,6-9
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF138551=LRR_8=PD(11.5=28.0)
A:
PF138551=LRR_8=PU(8.2=20.0)
C2:
PF138551=LRR_8=FE(39.3=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCGTTTAAACAGAAATAACCTTCAGT
R:
AGCACTTCCAGATCTCGCAGA
Band lengths:
144-216
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]