MmuEX6017605 @ mm10
Exon Skipping
Gene
ENSMUSG00000031558 | Slit2
Description
slit homolog 2 (Drosophila) [Source:MGI Symbol;Acc:MGI:1315205]
Coordinates
chr5:48000309-48182317:+
Coord C1 exon
chr5:48000309-48000380
Coord A exon
chr5:48170155-48170226
Coord C2 exon
chr5:48182246-48182317
Length
72 bp
Sequences
Splice sites
3' ss Seq
CTCCTTCATTTTGTTTCTAGTGA
3' ss Score
7.79
5' ss Seq
CCTGTAAGT
5' ss Score
7.52
Exon sequences
Seq C1 exon
GCGTTTAAACAGAAATAACCTTCAGTTGTTTCCTGAGCTGCTGTTTCTCGGGACTGCGAAGCTCTACCGGCT
Seq A exon
TGATCTCAGTGAAAATCAAATTCAAGCAATTCCAAGGAAGGCTTTCCGTGGGGCAGTTGACATTAAAAACCT
Seq C2 exon
GCAACTGGATTACAACCAGATCAGCTGCATTGAAGATGGGGCGTTCAGAGCTCTACGAGATCTGGAAGTGCT
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000031558-'8-22,'8-11,12-22=AN
Average complexity
A_S
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.074
Domain overlap (PFAM):
C1:
PF138551=LRR_8=PD(11.5=28.0)
A:
PF138551=LRR_8=PD(11.5=29.2)
C2:
PF138551=LRR_8=FE(39.3=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCGTTTAAACAGAAATAACCTTCAGT
R:
AGCACTTCCAGATCTCGTAGA
Band lengths:
144-216
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types