GgaEX0028613 @ galGal4
Exon Skipping
Gene
ENSGALG00000014419 | SLIT2
Description
slit homolog 2 protein precursor [Source:RefSeq peptide;Acc:NP_001254004]
Coordinates
chr4:74648482-74784079:-
Coord C1 exon
chr4:74784008-74784079
Coord A exon
chr4:74658759-74658830
Coord C2 exon
chr4:74648482-74648553
Length
72 bp
Sequences
Splice sites
3' ss Seq
TTTAATCTTCTTTTTCATAGTGA
3' ss Score
7.06
5' ss Seq
TCTGTAAGT
5' ss Score
7.96
Exon sequences
Seq C1 exon
GCGCCTAAACAGAAATAACCTCCAGTTGCTTTCTGAACTGCTCTTTCTGGGGACGCCGAAGTTATACAGGCT
Seq A exon
TGATCTTAGTGAAAATCAGATTCAAGCCATACCCAGGAAGGCATTTCGTGGAGCAGTAGACATAAAAAATCT
Seq C2 exon
GCAACTGGATTACAACCAGATCAGCTGTATTGAAGATGGGGCATTTAGGGCTCTACGCGACCTGGAAGTGCT
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000014419-'3-17,'3-15,5-17=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF138551=LRR_8=PD(11.5=28.0)
A:
PF138551=LRR_8=PU(8.2=20.0)
C2:
PF138551=LRR_8=FE(39.3=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCGCCTAAACAGAAATAACCTCC
R:
GCACTTCCAGGTCGCGTAG
Band lengths:
143-215
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]