HsaEX6083771 @ hg38
Exon Skipping
Gene
ENSG00000145147 | SLIT2
Description
slit guidance ligand 2 [Source:HGNC Symbol;Acc:HGNC:11086]
Coordinates
chr4:20268810-20480787:+
Coord C1 exon
chr4:20268810-20268881
Coord A exon
chr4:20467752-20467823
Coord C2 exon
chr4:20480716-20480787
Length
72 bp
Sequences
Splice sites
3' ss Seq
TTTGTTGTTGTTGTTTTTAGTGA
3' ss Score
8.56
5' ss Seq
TTTGTAAGT
5' ss Score
7.4
Exon sequences
Seq C1 exon
GCGTTTAAACAGAAATCACCTTCAGCTGTTTCCTGAGTTGCTGTTTCTTGGGACTGCGAAGCTATACAGGCT
Seq A exon
TGATCTCAGTGAAAACCAAATTCAGGCAATCCCAAGGAAAGCTTTCCGTGGGGCAGTTGACATAAAAAATTT
Seq C2 exon
GCAACTGGATTACAACCAGATCAGCTGTATTGAAGATGGGGCATTCAGGGCTCTCCGGGACCTGGAAGTGCT
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000145147_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF138551=LRR_8=PD(11.5=28.0)
A:
PF138551=LRR_8=PD(27.0=68.0),PF138551=LRR_8=PU(8.2=20.0)
C2:
PF138551=LRR_8=FE(39.3=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGTTTAAACAGAAATCACCTTCAGCT
R:
AGCACTTCCAGGTCCCGG
Band lengths:
143-215
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains