MmuEX6017605 @ mm9
Exon Skipping
Gene
ENSMUSG00000031558 | Slit2
Description
slit homolog 2 (Drosophila) [Source:MGI Symbol;Acc:MGI:1315205]
Coordinates
chr5:48391548-48573556:+
Coord C1 exon
chr5:48391548-48391619
Coord A exon
chr5:48561394-48561465
Coord C2 exon
chr5:48573485-48573556
Length
72 bp
Sequences
Splice sites
3' ss Seq
CTCCTTCATTTTGTTTCTAGTGA
3' ss Score
7.79
5' ss Seq
CCTGTAAGT
5' ss Score
7.52
Exon sequences
Seq C1 exon
GCGTTTAAACAGAAATAACCTTCAGTTGTTTCCTGAGCTGCTGTTTCTCGGGACTGCGAAGCTCTACCGGCT
Seq A exon
TGATCTCAGTGAAAATCAAATTCAAGCAATTCCAAGGAAGGCTTTCCGTGGGGCAGTTGACATTAAAAACCT
Seq C2 exon
GCAACTGGATTACAACCAGATCAGCTGCATTGAAGATGGGGCGTTCAGAGCTCTACGAGATCTGGAAGTGCT
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000031558-'3-4,'3-3,4-4=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF138551=LRR_8=PD(11.5=28.0)
A:
PF138551=LRR_8=PD(11.5=29.2)
C2:
PF138551=LRR_8=FE(39.3=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCGTTTAAACAGAAATAACCTTCAGT
R:
AGCACTTCCAGATCTCGTAGA
Band lengths:
144-216
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: