GgaEX0028857 @ galGal3
Exon Skipping
Gene
ENSGALG00000009357 | RAPGEF4
Description
NA
Coordinates
chr7:18787597-18797464:-
Coord C1 exon
chr7:18797376-18797464
Coord A exon
chr7:18794879-18794957
Coord C2 exon
chr7:18787597-18787747
Length
79 bp
Sequences
Splice sites
3' ss Seq
TTTTCCTTCTCTTTTCACAGATT
3' ss Score
12.5
5' ss Seq
ACAATATCC
5' ss Score
-12.05
Exon sequences
Seq C1 exon
ATACATTGTGATGTCAGGAACTCCAGAGAAAATTTTAGAGCACTTTCTAGAAACTATGCGCCTTGAAGCAACTTTAAATGAAGCAACAG
Seq A exon
ATTCTGTTTTAAATGATTTTATTATGATGCACTGTGTTTTTATGCCAAATAGTCAGCTCTGCCCAGCCTTGATGGCACA
Seq C2 exon
TTATCATGCCCAGCCTTCCCAGGGTACGGAGCAAGAGAAAATGGATTATGCTCTCAACAATAAAAGGCGAGTCATTCGACTGGTTCTGCAGTGGGCTGCTTTGTATGGAGATTTGCTACAAGAGGATGAAGCAGCAATGGCCTTTTTGGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000009357_CASSETTE1
Average complexity
S
Mappability confidence:
NA
Protein Impact
In the CDS, with uncertain impact
No structure available
Features
Disorder rate (Iupred):
C1=0.056 A=0.000 C2=NA
Domain overlap (PFAM):
C1:
PF0061815=RasGEF_N=PU(25.5=90.3)
A:
PF0061815=RasGEF_N=FE(44.1=100)
C2:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACTATGCGCCTTGAAGCAACT
R:
GCCATTGCTGCTTCATCCTCT
Band lengths:
178-257
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]