GgaEX1000648 @ galGal4
Exon Skipping
Description
Uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:F1NBU4]
Coordinates
chr28:3449970-3450719:+
Coord C1 exon
chr28:3449970-3450029
Coord A exon
chr28:3450226-3450324
Coord C2 exon
chr28:3450620-3450719
Length
99 bp
Sequences
Splice sites
3' ss Seq
GTTTTCTTTCGTTGTTTTAGATA
3' ss Score
11.21
5' ss Seq
ATGGTGATT
5' ss Score
3.18
Exon sequences
Seq C1 exon
GAACACTGGTTTGCTACACAGGAAAGACAACTGGAATGTATTCGTAGAGGCAAGGACAAG
Seq A exon
ATAAGGTGCCAAAACTACATCCTCCTCCTCCATAAGATCAATGACTCCAACGTGTATGTTTGTGGAACAAATGCCTATCACCCGCTGTGTGACCACATG
Seq C2 exon
GTTATCCAGAGGACAAAGATGCATTTGCAAGGAAGAGCTGAAGAGAGCAGAGGGAAGTGTCCTTTTGAACCAACTCTGAAGTATGCATCTGTTTTTGTAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000003058_CASSETTE2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0140314=Sema=FE(4.4=100)
A:
PF0140314=Sema=FE(7.4=100)
C2:
PF0140314=Sema=FE(7.6=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AACACTGGTTTGCTACACAGGA
R:
CTACAAAAACAGATGCATACTTCAGA
Band lengths:
159-258
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]