GgaEX1000789 @ galGal4
Exon Skipping
Description
Uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:E1C245]
Coordinates
chr23:5374565-5377033:+
Coord C1 exon
chr23:5374565-5374735
Coord A exon
chr23:5375495-5375661
Coord C2 exon
chr23:5376874-5377033
Length
167 bp
Sequences
Splice sites
3' ss Seq
TGTCCCCCTTCCTTTCTCAGCTG
3' ss Score
11.39
5' ss Seq
CAGGTGAGC
5' ss Score
9.6
Exon sequences
Seq C1 exon
GTGGCCCAGAGGATCGCCCAGCTGCAGGAGGCCCTGCTGCGCTGTGGGAAGTTCCAGGATGCCCTGGAGCCGTTGCTGAGCTGGCTGACTGACACCGAGGAGCTCATCTCCAACCAGAAACCTCCCTCTGCTGAGTACAAGGTGGTGAAAGCGCAGATCCAGGAGCAGAAG
Seq A exon
CTGCTGCAGCGACTCCTGGACGATCGCAAAGCCACCGTTGAGATGATCCAGGCGGAGGGTGGGCGCATCGCACAGTCAGCTGAGCCCGCAGACCGGGAGAAGATCACCGGGCAGCTGCAGAGCCTGGAGAGCCGCTGGGCAGCGCTGCTGTGCCGGGCGGCGGGCAG
Seq C2 exon
GCAGAAGCAGCTGGAGGACATCCTGGTGCTGGCAAAGCAGTTCCATGAGACCACAGAGCCTGTGTCAGACTGGCTGTCTGTGACGGAGAAGAAGTTGGCCAACTCGGAGCCCATCGGCACACAGACTGCCAAGATCCAGCAGCAGATCAGCCGGCACAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000003693-'91-102,'91-101,93-102
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.035 A=0.304 C2=0.093
Domain overlap (PFAM):
C1:
PF0043516=Spectrin=PD(8.3=15.8),PF0043516=Spectrin=PU(41.1=77.2)
A:
PF0043516=Spectrin=FE(51.4=100)
C2:
PF0043516=Spectrin=PD(5.6=11.1),PF0043516=Spectrin=PU(41.1=81.5)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTTGCTGAGCTGGCTGACTG
R:
CTGCTGGATCTTGGCAGTCTG
Band lengths:
242-409
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]