GgaEX1000792 @ galGal3
Exon Skipping
Gene
ENSGALG00000003693 | MACF1
Description
NA
Coordinates
chr23:5695734-5697491:+
Coord C1 exon
chr23:5695734-5695818
Coord A exon
chr23:5696667-5696908
Coord C2 exon
chr23:5697285-5697491
Length
242 bp
Sequences
Splice sites
3' ss Seq
GCCCTGTTGCTGTCCCACAGGGG
3' ss Score
10.94
5' ss Seq
AAGGTGGGG
5' ss Score
5.87
Exon sequences
Seq C1 exon
GCTCTGAACGAGGAAATTGTGAACAGGAAGAAGAATGTGGATCAAGCCATCAGAAATGGGCAGGCTCTCCTGAAGCAAACCACAG
Seq A exon
GGGAGGAGGTGCTGCTCATCCAGGAGAAGCTGGATGGGATTAAGACCCGCTACTCGGACATCACTGCCGCCAGCTCCAAGGCGCTGCGCACACTGGAGCAGGCTCGCCAGCTGGCCACCAAGTTCCAGTCCACGCATGAGGAGCTCAATGCCTGGATGAGCAAAGTGGAGGATGAGCTGGCGTCCAGTGGGGGACAGTCCCCAGCCAGCGAGCAGATACCCCAGTTCCAGCAGAGGCAGAAG
Seq C2 exon
GAGCTGAAGAAGGAGGTGATGGAGCAGCGGCTCGTCCTGGACACGGTGAACGAGGTGAGCCGGGCGCTGCTGGAGCTCGTGCCATGGCGAGCCCGCGAGGGGCTGGACAAGCTCGTCTCCGACACCAACGAGCGGTACAAGCTGGTCAGTGACACCGTCAGGCAGCGGGTGGAGGAGATCGATGCTGCCATTCAGAGGTCCCAGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000003693-'71-72,'71-71,72-72=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.333 C2=0.000
Domain overlap (PFAM):
C1:
PF0043516=Spectrin=FE(26.4=100)
A:
PF0043516=Spectrin=PD(31.1=40.7),PF0043516=Spectrin=PU(41.1=54.3)
C2:
PF0043516=Spectrin=PD(57.0=88.4),PF0043516=Spectrin=PU(3.7=5.8)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCTCTGAACGAGGAAATTGTGA
R:
CTGCTGGGACCTCTGAATGG
Band lengths:
292-534
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]