GgaEX1004162 @ galGal3
Exon Skipping
Description
NA
Coordinates
chr18:7934071-7935037:-
Coord C1 exon
chr18:7934899-7935037
Coord A exon
chr18:7934362-7934547
Coord C2 exon
chr18:7934071-7934218
Length
186 bp
Sequences
Splice sites
3' ss Seq
GGATGCTTCTGTTCTTACAGGTC
3' ss Score
9.17
5' ss Seq
AAGGTACGG
5' ss Score
10.26
Exon sequences
Seq C1 exon
GCTCTCCTGGAGCCTGCTGTATGCCATCTACGTGCTGGTCCTGTCCTGCCCGCTGACTGCCCTGGTGATGAACGAGACTTTCCACAACAGCAGCTTCTCTGCCATCCTAATGCTGTTTTTCCTGTATGGCCTTGCATGT
Seq A exon
GTCCACCTGGTCTTCATGCTCTGCTCCCTCCTGAGAACATCCAAACTTGTGGGCTCCCTGGGATTCCTCATCACCTTTCTCTTTGGCTGCCTGAGCCTCTCAGTGCTGATAGAAAAGCTTCCAGAACCTTTGCAGTGGTTTCTCAGCCTCTTTTGTCCTTTTGCATTCAATGTTGGCATTGCGAAG
Seq C2 exon
ATTTTCAGTTTGGAAAGATATGGAATAGGTTTCTCTTTTTCTAACATTATGGAGGAATCATACTTTTTACTTTCGACCTACATTATGCTGACCTTTGACTCGGTCTTGTACATGCTGTTAGCTATCTACTTCGACAAAGTTCTGCAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000021399-'5-7,'5-6,6-7=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF126982=ABC2_membrane_3=FE(12.0=100)
A:
PF126982=ABC2_membrane_3=FE(15.9=100)
C2:
PF126982=ABC2_membrane_3=PD(10.9=84.0)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTCTCCTGGAGCCTGCTGTAT
R:
ACAGCATGTACAAGACCGAGT
Band lengths:
256-442
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]