RnoEX6050275 @ rn6
Exon Skipping
Gene
ENSRNOG00000004040 | Abca8
Description
ATP binding cassette subfamily A member 8 [Source:RGD Symbol;Acc:1307069]
Coordinates
chr10:98285425-98287001:-
Coord C1 exon
chr10:98286860-98287001
Coord A exon
chr10:98286155-98286340
Coord C2 exon
chr10:98285425-98285572
Length
186 bp
Sequences
Splice sites
3' ss Seq
TGGCTCTGCTCTCATTCCAGATC
3' ss Score
9.65
5' ss Seq
CAGGTGAGG
5' ss Score
10.07
Exon sequences
Seq C1 exon
GCTATCCTGGGGTCTGCTCTATGCTGGCTTTGTCTTCGTGATGGCCCTATCCCTGGCACTTGTTATCAAGTCTGTCCAGTTTCTTATTCTGACCAGCTTCACGGTGGTCTTTAGCCTCTTCCTCCTGTACGGATTGTCTATG
Seq A exon
ATCTCTTTGGCCTTCCTAATGAGCGTCTTGGTGAGGAAGTCTGTCCTCACTGGCCTGACTGTGTTCCTTCTCACCATCTTCTGGGGAAGCCTCGGTTTCACAGCCCTGTACAGATATCTCCCTGCACCTTTGGAATGGACTCTCAGTCTTTTTAGCCCCTTCGCCTTCACACTAGGAATGGCCCAG
Seq C2 exon
CTCTTACGCGTGGACTATGATTTAAATTCTAACGCACCCCCTGATCCAGCTGGTAGCTCAAATCTGATTGCAGCAACCAATTTCATGCTGGCATTTGATGCGCTTTTGTATCTGGCCCTGACGATGTACTTTGAAAAAGTTCTGCCAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000004040-'10-13,'10-12,11-13=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF126982=ABC2_membrane_3=FE(12.1=100),PF0308311=MtN3_slv=PD(45.8=79.2)
A:
PF126982=ABC2_membrane_3=FE(15.6=100)
C2:
PF126982=ABC2_membrane_3=PD(10.8=84.0)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTTTGTCTTCGTGATGGCCCT
R:
ACATCGTCAGGGCCAGATACA
Band lengths:
242-428
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]