GgaEX1016287 @ galGal4
Exon Skipping
Gene
ENSGALG00000005180 | COL11A1
Description
collagen, type XI, alpha 1 [Source:HGNC Symbol;Acc:HGNC:2186]
Coordinates
chr8:10240569-10241063:+
Coord C1 exon
chr8:10240569-10240613
Coord A exon
chr8:10240870-10240923
Coord C2 exon
chr8:10241019-10241063
Length
54 bp
Sequences
Splice sites
3' ss Seq
TTTTAAATTTTATTTGACAGGGT
3' ss Score
7.83
5' ss Seq
AAGGTAATT
5' ss Score
8.83
Exon sequences
Seq C1 exon
GGATTACATGGCAAACCAGGCCCCAGAGGACAGCGAGGACCAACA
Seq A exon
GGTCCAAGAGGCTCAAGAGGCCCAAGAGGTCCCACAGGCAAACCAGGTCCAAAG
Seq C2 exon
GGTACTTCAGGCAATGATGGTCCGCCTGGCCCACCAGGTGAAAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000005180_MULTIEX1-4/4=3-C2
Average complexity
S
Mappability confidence:
75%=75=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=1.000 C2=1.000
Domain overlap (PFAM):
C1:
PF0139113=Collagen=PD(10.4=66.7),PF0139113=Collagen=FE(20.6=100)
A:
PF0139113=Collagen=FE(25.0=100)
C2:
PF0139113=Collagen=PD(1.5=6.7)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Cow
(bosTau6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAAACCAGGCCCCAGAGGA
R:
CCTTTCACCTGGTGGGCCA
Band lengths:
79-133
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]