HsaEX6032433 @ hg19
Exon Skipping
Gene
ENSG00000060718 | COL11A1
Description
collagen, type XI, alpha 1 [Source:HGNC Symbol;Acc:2186]
Coordinates
chr1:103444264-103444660:-
Coord C1 exon
chr1:103444616-103444660
Coord A exon
chr1:103444416-103444469
Coord C2 exon
chr1:103444264-103444308
Length
54 bp
Sequences
Splice sites
3' ss Seq
TCTTTTGTTCTCATCTGCAGGGT
3' ss Score
11.97
5' ss Seq
AAGGTATCA
5' ss Score
7.22
Exon sequences
Seq C1 exon
GGAGTAGCTGGCAAACCAGGCCCTCGGGGTCAGCGTGGTCCAACG
Seq A exon
GGTCCTCGAGGTTCAAGAGGTGCAAGAGGTCCCACTGGGAAACCTGGGCCAAAG
Seq C2 exon
GGCACTTCAGGTGGCGATGGCCCTCCTGGCCCTCCAGGTGAAAGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000060718-'39-41,'39-40,40-41=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.981 A=0.866 C2=0.874
Domain overlap (PFAM):
C1:
PF0139113=Collagen=PD(9.9=66.7)
A:
PF0139113=Collagen=PU(3.0=11.1)
C2:
PF0139113=Collagen=PU(12.5=53.3)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTCGGGGTCAGCGTGGTC
R:
TCTTTCACCTGGAGGGCCA
Band lengths:
68-122
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)