MmuEX6073574 @ mm9
Exon Skipping
Gene
ENSMUSG00000027966 | Col11a1
Description
collagen, type XI, alpha 1 [Source:MGI Symbol;Acc:MGI:88446]
Coordinates
chr3:113841496-113841883:+
Coord C1 exon
chr3:113841496-113841540
Coord A exon
chr3:113841662-113841715
Coord C2 exon
chr3:113841839-113841883
Length
54 bp
Sequences
Splice sites
3' ss Seq
TCTTCTTGTCTCTTATGTAGGGT
3' ss Score
9.5
5' ss Seq
AAGGTATCA
5' ss Score
7.22
Exon sequences
Seq C1 exon
GGAATTGCTGGCAAACCAGGCCCCCGGGGACAGCGTGGTCCAACG
Seq A exon
GGTCCTCGAGGTTCCAGAGGCGCCAGAGGTCCCACGGGAAAACCTGGTCCGAAG
Seq C2 exon
GGTACTTCAGGTGGTGATGGCCCTCCTGGTCCTCCAGGCGAAAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000027966-'36-35,'36-34,37-35=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=0.934 C2=0.923
Domain overlap (PFAM):
C1:
PF0139113=Collagen=PD(6.6=40.0)
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: