RnoEX6011207 @ rn6
Exon Skipping
Gene
ENSRNOG00000023148 | Col11a1
Description
collagen type XI alpha 1 chain [Source:RGD Symbol;Acc:2372]
Coordinates
chr2:216978945-216979310:+
Coord C1 exon
chr2:216978945-216978989
Coord A exon
chr2:216979098-216979151
Coord C2 exon
chr2:216979266-216979310
Length
54 bp
Sequences
Splice sites
3' ss Seq
TCTTCTCATCTCTTATGTAGGGT
3' ss Score
8.89
5' ss Seq
AAGGTATCA
5' ss Score
7.22
Exon sequences
Seq C1 exon
GGAATTGCTGGCAAACCAGGCCCCCGAGGACAACGTGGTCCAACG
Seq A exon
GGTCCTCGAGGTTCCAGAGGCGCCAGAGGTCCCACAGGAAAACCTGGGCCGAAG
Seq C2 exon
GGTACATCAGGTGGTGATGGCCCTCCTGGCCCACCAGGCGAAAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000023148-'39-41,'39-40,40-41=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=0.811 C2=0.750
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAAACCAGGCCCCCGAGG
R:
CCAGGAGGGCCATCACCA
Band lengths:
63-117
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]