GgaEX1016349 @ galGal3
Exon Skipping
Gene
ENSGALG00000004286 | COL13A1
Description
NA
Coordinates
chr6:12134729-12136126:+
Coord C1 exon
chr6:12134729-12134782
Coord A exon
chr6:12135556-12135597
Coord C2 exon
chr6:12136100-12136126
Length
42 bp
Sequences
Splice sites
3' ss Seq
TATCTTGCATTGCTTTCTAGATG
3' ss Score
8.8
5' ss Seq
CCAGTAAGT
5' ss Score
9.09
Exon sequences
Seq C1 exon
GGAGAGAAGGGTCAGCCTGGGGAGCGTGGAGACAAAGGAAATCCAGGAGAATCG
Seq A exon
ATGTCTGGTCCCCCTGGACCTCAAGGCCCACCAGGACCTCCA
Seq C2 exon
GGTCTTCAGGGCCTCCCAGGACCGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000004286-'32-33,'32-32,33-33=AN
Average complexity
A_C1
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=1.000 C2=1.000
Domain overlap (PFAM):
C1:
PF0139113=Collagen=FE(15.5=100),PF0139113=Collagen=FE(18.6=100),PF0139113=Collagen=PU(2.4=14.3)
A:
PF0139113=Collagen=FE(15.5=100),PF0139113=Collagen=FE(18.6=100)
C2:
PF0139113=Collagen=PD(6.9=22.2),PF0139113=Collagen=FE(43.3=100),PF0139113=Collagen=PU(28.4=85.2)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGAGAGAAGGGTCAGCCTGG
R:
GTCCTGGGAGGCCCTGAAG
Band lengths:
76-118
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]