MmuEX0012142 @ mm10
Exon Skipping
Gene
ENSMUSG00000058806 | Col13a1
Description
collagen, type XIII, alpha 1 [Source:MGI Symbol;Acc:MGI:1277201]
Coordinates
chr10:61856782-61860484:-
Coord C1 exon
chr10:61860440-61860484
Coord A exon
chr10:61857588-61857629
Coord C2 exon
chr10:61856782-61856808
Length
42 bp
Sequences
Splice sites
3' ss Seq
AACTTCCTTTTGGCTTCTAGGTT
3' ss Score
8.85
5' ss Seq
CCGGTAAGT
5' ss Score
10.91
Exon sequences
Seq C1 exon
GGAGAGAAAGGAGAAGCTGGGGAGAAAGGCGACCCGGGAGCAGAG
Seq A exon
GTTCCTGGGCCGCCAGGGCCAGAGGGTCCTCCAGGACCTCCG
Seq C2 exon
GGCCTCCAAGGTTTTCCTGGACCAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000058806-'42-38,'42-37,43-38=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=1.000 C2=1.000
Domain overlap (PFAM):
C1:
PF0139113=Collagen=FE(22.6=100),PF0139113=Collagen=PU(0.1=0.0)
A:
PF0139113=Collagen=FE(16.9=100),PF0139113=Collagen=PU(18.3=92.9)
C2:
PF0139113=Collagen=PD(3.9=33.3),PF0139113=Collagen=FE(11.3=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGAGAGAAAGGAGAAGCTGGG
R:
GGTCCAGGAAAACCTTGGAGG
Band lengths:
68-110
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types