GgaEX1016953 @ galGal3

Exon Skipping

Gene

ENSGALG00000005811 | COL7A1

Description

NA

Coordinates

chr12:9332028-9332305:+

Coord C1 exon

chr12:9332028-9332072

Coord A exon

chr12:9332168-9332203

Coord C2 exon

chr12:9332274-9332305

Length

36 bp

Sequences

Splice sites

3' ss Seq

GTATCCTCTCTCTGCACCAGGGA

3' ss Score

8.07

5' ss Seq

AAGGTGAGG

5' ss Score

9.16

Exon sequences

Seq C1 exon

GGCGAGACAGGAGCTCCAGGACGGCCAGGGCCATCGGGCAGAGAG

Seq A exon

GGAGTACCGGGACCCGCCGGGCCACGGGGCGAGAAG

Seq C2 exon

GGTGATGTGGGAGCGCCCGGTGAACCTGGCCA

VastDB Features

Vast-tools module Information

Secondary ID

ENSGALG00000005811-'40-44,'40-43,41-44=AN

Average complexity

A_S

Mappability confidence:

100%=100=100%

Protein Impact

Alternative protein isoforms (Ref)

No structure available

Features

Disorder rate (Iupred):

  C1=1.000 A=1.000 C2=1.000

Domain overlap (PFAM):

C1:

PF0139113=Collagen=FE(22.2=100)

A:

PF0139113=Collagen=FE(17.5=100)

C2:

PF0139113=Collagen=FE(15.9=100)

Main Inclusion Isoform:

ENSGALP00000009317

Main Skipping Isoform:

NA

Other Inclusion Isoforms:

ENSGALP00000009317f5162A

Other Skipping Isoforms:

NA

Associated events

Other assemblies

galGal4

Conservation

Human

(hg38)

chr3:48582478-48582513

HIGH PSI

HsaEX6055793

(COL7A1)

Human

(hg19)

chr3:48619911-48619946

HIGH PSI

HsaEX6055793

(COL7A1)

Mouse

(mm10)

chr9:108966436-108966471

HIGH PSI

MmuEX6069115

(Col7a1)

Mouse

(mm9)

chr9:108869039-108869071

HIGH PSI

MmuEX6069113

(Col7a1)

Rat

(rn6)

chr8:117707845-117707880

HIGH PSI

RnoEX0023515

(Col7a1)

Cow

(bosTau6)

chr22:51873007-51873039

HIGH PSI

BtaEX6095689

(COL7A1)

Zebrafish

(danRer10)

No conservation detected

Fruitfly

(dm6)

No conservation detected

Primers PCR

Suggestions for RT-PCR validation

F:

No suggested primer sequences

R:

No suggested primer sequences

Band lengths:

Functional annotations

(Submit an annotation)

There are 0 annotated functions for this event

GENOMIC CONTEXT[edit]

INCLUSION PATTERN[edit]