HsaEX6055793 @ hg19
Exon Skipping
Gene
ENSG00000114270 | COL7A1
Description
collagen, type VII, alpha 1 [Source:HGNC Symbol;Acc:2214]
Coordinates
chr3:48619756-48620086:-
Coord C1 exon
chr3:48620042-48620086
Coord A exon
chr3:48619911-48619946
Coord C2 exon
chr3:48619756-48619791
Length
36 bp
Sequences
Splice sites
3' ss Seq
CACACTTTCTCTACATTCAGGGG
3' ss Score
8.75
5' ss Seq
AAGGTGGGT
5' ss Score
8.23
Exon sequences
Seq C1 exon
GGGCTGCCAGGGGTTGCTGGACGTCCTGGAGCCAAGGGTCCTGAA
Seq A exon
GGGCCACCAGGACCCACTGGCCGCCAAGGAGAGAAG
Seq C2 exon
GGGGAGCCTGGTCGCCCTGGGGACCCTGCAGTGGTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000114270-'44-47,'44-46,45-47=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=1.000 C2=1.000
Domain overlap (PFAM):
C1:
PF0139113=Collagen=FE(23.3=100)
A:
PF0139113=Collagen=FE(18.3=100)
C2:
PF0139113=Collagen=FE(18.3=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAGGGGTTGCTGGACGTC
R:
CCACTGCAGGGTCCCCAG
Band lengths:
72-108
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)