BtaEX6095691 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000019081 | COL7A1
Description
collagen, type VII, alpha 1 [Source:HGNC Symbol;Acc:HGNC:2214]
Coordinates
chr22:51872380-51872693:+
Coord C1 exon
chr22:51872380-51872424
Coord A exon
chr22:51872505-51872540
Coord C2 exon
chr22:51872661-51872693
Length
36 bp
Sequences
Splice sites
3' ss Seq
CACGCTTTCTCCATGTGCAGGGG
3' ss Score
9.41
5' ss Seq
AAGGTGGGT
5' ss Score
8.23
Exon sequences
Seq C1 exon
GGGCTGCCAGGAGTTGCTGGACGACCTGGGCCCGAGGGTCCTGAA
Seq A exon
GGGCCACCAGGACCGACCGGCCGCCGAGGAGAGAAG
Seq C2 exon
GGGGAGCCTGGTCGGCCTGGAGACCCTGCAGTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000019081-'44-48,'44-47,45-48=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=1.000 C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGCCAGGAGTTGCTGGAC
R:
ACTGCAGGGTCTCCAGGC
Band lengths:
74-110
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]