RnoEX0023515 @ rn6
Exon Skipping
Gene
ENSRNOG00000020579 | Col7a1
Description
collagen type VII alpha 1 chain [Source:RGD Symbol;Acc:1311417]
Coordinates
chr8:117707711-117708031:+
Coord C1 exon
chr8:117707711-117707755
Coord A exon
chr8:117707845-117707880
Coord C2 exon
chr8:117707999-117708031
Length
36 bp
Sequences
Splice sites
3' ss Seq
CACAATATCTCCATGTACAGGGG
3' ss Score
5.63
5' ss Seq
AAGGTAGGT
5' ss Score
10.29
Exon sequences
Seq C1 exon
GGGCTTCCCGGAGCTGCTGGACGTCCTGGAGTGGAGGGTCCTGAG
Seq A exon
GGGCCACCAGGACCCCCTGGCCGCCGGGGAGAAAAG
Seq C2 exon
GGAGAGCCTGGTCGCCCTGGGGATCCTGCATTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000020579-'49-47,'49-46,50-47
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=1.000 C2=1.000
Domain overlap (PFAM):
C1:
PF0139113=Collagen=FE(23.0=100)
A:
PF0139113=Collagen=FE(18.0=100)
C2:
PF0139113=Collagen=FE(16.4=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTTCCCGGAGCTGCTGGA
R:
CAATGCAGGATCCCCAGGG
Band lengths:
75-111
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]