GgaEX1016945 @ galGal4
Exon Skipping
Gene
ENSGALG00000005811 | COL7A1
Description
collagen, type VII, alpha 1 [Source:HGNC Symbol;Acc:HGNC:2214]
Coordinates
chr12:9072865-9073222:+
Coord C1 exon
chr12:9072865-9072909
Coord A exon
chr12:9073061-9073096
Coord C2 exon
chr12:9073178-9073222
Length
36 bp
Sequences
Splice sites
3' ss Seq
TCCTCTGCTTCACTCTGCAGGGA
3' ss Score
10.88
5' ss Seq
AAGGTAGGT
5' ss Score
10.29
Exon sequences
Seq C1 exon
GGAGAGCGTGGGGCACCAGGCGAGCTGGGAGAGACGGGCCAGAAG
Seq A exon
GGAGACCGCGGTGCACCTGGCCCCGAGGGTGAGAAG
Seq C2 exon
GGCGAGACAGGAGCTCCAGGACGGCCAGGGCCATCGGGCAGAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000005811-'45-45,'45-44,47-45
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=1.000 C2=1.000
Domain overlap (PFAM):
C1:
PF0139113=Collagen=PU(12.1=53.3)
A:
PF0139113=Collagen=FE(16.7=100)
C2:
PF0139113=Collagen=FE(21.2=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CACCAGGCGAGCTGGGAG
R:
CCGTCCTGGAGCTCCTGTC
Band lengths:
56-92
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]