RnoEX6037792 @ rn6
Exon Skipping
Gene
ENSRNOG00000020579 | Col7a1
Description
collagen type VII alpha 1 chain [Source:RGD Symbol;Acc:1311417]
Coordinates
chr8:117707036-117707422:+
Coord C1 exon
chr8:117707036-117707071
Coord A exon
chr8:117707270-117707314
Coord C2 exon
chr8:117707387-117707422
Length
45 bp
Sequences
Splice sites
3' ss Seq
TCCGTCTTCTCTCTCCTTAGGGT
3' ss Score
13.58
5' ss Seq
AAGGTATGT
5' ss Score
9.79
Exon sequences
Seq C1 exon
GGCCTGCGGGGAGCTCCTGGAGTTACTGGGCCCAAA
Seq A exon
GGTGATCGGGGACTGACAGGGACCCCGGGTGAGCCTGGAGAGAAG
Seq C2 exon
GGTGAACGGGGACCACCTGGTCCCGTGGGACCCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000020579-'46-44,'46-43,47-44=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=1.000 C2=1.000
Domain overlap (PFAM):
C1:
PF0139113=Collagen=FE(12.8=100)
A:
PF0139113=Collagen=FE(16.3=100),PF0139113=Collagen=PU(13.1=53.3)
C2:
PF0139113=Collagen=PD(9.3=66.7),PF0139113=Collagen=FE(18.0=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGAGCTCCTGGAGTTACTGGG
R:
CCAGGTGGTCCCCGTTCA
Band lengths:
47-92
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]