GgaEX1016958 @ galGal3
Exon Skipping
Gene
ENSGALG00000005811 | COL7A1
Description
NA
Coordinates
chr12:9332764-9333130:+
Coord C1 exon
chr12:9332764-9332823
Coord A exon
chr12:9332909-9332944
Coord C2 exon
chr12:9333050-9333130
Length
36 bp
Sequences
Splice sites
3' ss Seq
TGTCCTTCTGTACCTCCCAGGGC
3' ss Score
9.9
5' ss Seq
AAGGTAACG
5' ss Score
10.19
Exon sequences
Seq C1 exon
GGTGTCCCTGGCCTGAGCATCCCAGGACCAGCTGGCCCCAAAGGCGAGCAGGGTGAGCGG
Seq A exon
GGCATCACTGGCCTCACTGGCAGGAGTGGCCCCAAG
Seq C2 exon
GGTGACGCAGGGGAGCCGGGTGAGAAGGGTGAGCCAGGCAGAGTGGGTGCACCAGGACAACCAGGGCAGCGTGGCAAGGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000005811-'44-48,'44-47,45-48=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=1.000 C2=1.000
Domain overlap (PFAM):
C1:
PF0139113=Collagen=FE(30.2=100)
A:
PF0139113=Collagen=FE(17.7=100),PF0139113=Collagen=PU(10.0=66.7)
C2:
PF0139113=Collagen=PD(34.9=81.5),PF0139113=Collagen=PU(37.1=96.3)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCTGAGCATCCCAGGACCAG
R:
CTGGTTGTCCTGGTGCACC
Band lengths:
113-149
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]