BtaEX6095686 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000019081 | COL7A1
Description
collagen, type VII, alpha 1 [Source:HGNC Symbol;Acc:HGNC:2214]
Coordinates
chr22:51873333-51873702:+
Coord C1 exon
chr22:51873333-51873392
Coord A exon
chr22:51873489-51873524
Coord C2 exon
chr22:51873622-51873702
Length
36 bp
Sequences
Splice sites
3' ss Seq
CTCCTCCCCATGCCCTGCAGGGT
3' ss Score
8.93
5' ss Seq
CCGGTGAGT
5' ss Score
10.9
Exon sequences
Seq C1 exon
GGCTCACCTGGCTTGGCTCTTCCTGGAGACCCTGGCCCCAAGGGAGACCCTGGAGGCCGA
Seq A exon
GGTCCCATTGGCCTCACTGGCAGAGCAGGACCCCCG
Seq C2 exon
GGCGACTCAGGACCCCCTGGAGAGAAGGGAGACCCTGGGCGGCCCGGTTCCCCAGGACCCGTCGGCCCCCGAGGACGAGAC
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000019081-'49-53,'49-52,50-53=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=1.000 C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTTGGCTCTTCCTGGAGACCC
R:
CGACGGGTCCTGGGGAAC
Band lengths:
113-149
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]