RnoEX6037785 @ rn6
Exon Skipping
Gene
ENSRNOG00000020579 | Col7a1
Description
collagen type VII alpha 1 chain [Source:RGD Symbol;Acc:1311417]
Coordinates
chr8:117708865-117709362:+
Coord C1 exon
chr8:117708865-117708924
Coord A exon
chr8:117709017-117709052
Coord C2 exon
chr8:117709282-117709362
Length
36 bp
Sequences
Splice sites
3' ss Seq
TCCCCTTCTTGCTTTCTCAGGGT
3' ss Score
11.54
5' ss Seq
ACAGTAAGT
5' ss Score
9.49
Exon sequences
Seq C1 exon
GGTGCACCTGGGTTGGCTCTTCCTGGAGACCCTGGCCCCAAAGGAGACCCTGGAGACAGA
Seq A exon
GGTCCCATTGGCCTCACTGGCAGGGCAGGACCCACA
Seq C2 exon
GGTGACTCAGGGCCTCCTGGAGAGAAGGGAGAACCTGGGCGACCTGGTTCCCCAGGACCTGTTGGCCCTCGAGGAAGAGAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000020579-'54-52,'54-51,56-52=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=1.000 C2=1.000
Domain overlap (PFAM):
C1:
PF0139113=Collagen=PU(15.5=65.0)
A:
PF0139113=Collagen=FE(13.1=100)
C2:
PF0139113=Collagen=FE(31.0=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGCTCTTCCTGGAGACCCTG
R:
ATCTCTTCCTCGAGGGCCAAC
Band lengths:
127-163
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]