GgaEX1016966 @ galGal3
Exon Skipping
Gene
ENSGALG00000005811 | COL7A1
Description
NA
Coordinates
chr12:9333909-9334233:+
Coord C1 exon
chr12:9333909-9333950
Coord A exon
chr12:9334036-9334116
Coord C2 exon
chr12:9334198-9334233
Length
81 bp
Sequences
Splice sites
3' ss Seq
CACTGTGCCATCCCTGCCAGGGG
3' ss Score
7.3
5' ss Seq
AGAGTAAGT
5' ss Score
9.35
Exon sequences
Seq C1 exon
GTGGATGTGGGGCTTGGAGGAGCGGGAGAGAAGGGTGAGAAG
Seq A exon
GGGGATGCTGGGGATCCGGGCGAGGATGGAGCAAAGGGGGCCAAGGGTGAGAGCGGCCCCCCCGGACTGCCGGGAGTGAGA
Seq C2 exon
GGCATTGAAGGCCCCCGCGGCCCCCCTGGTGCACGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000005811-'52-56,'52-55,53-56=AN
Average complexity
A_S
Mappability confidence:
88%=100=75%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=1.000 C2=1.000
Domain overlap (PFAM):
C1:
PF0139113=Collagen=PD(10.3=50.0),PF0139113=Collagen=PU(15.9=71.4)
A:
PF0139113=Collagen=FE(41.3=100)
C2:
PF0139113=Collagen=FE(17.5=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]