BtaEX6095678 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000019081 | COL7A1
Description
collagen, type VII, alpha 1 [Source:HGNC Symbol;Acc:HGNC:2214]
Coordinates
chr22:51875059-51875408:+
Coord C1 exon
chr22:51875059-51875088
Coord A exon
chr22:51875217-51875297
Coord C2 exon
chr22:51875373-51875408
Length
81 bp
Sequences
Splice sites
3' ss Seq
CACGCTCGTCTCTGCCACAGGGA
3' ss Score
8.67
5' ss Seq
AGGGTGAGT
5' ss Score
9.25
Exon sequences
Seq C1 exon
GTGGACGTGGGACTTGGAGCCGGAGAGAAG
Seq A exon
GGAGAGCCTGGGGACCGAGGACAGGAGGGTCCACGAGGACCCAAGGGCGACCCTGGCCCCCCTGGAGCTTCTGGGGAGAGG
Seq C2 exon
GGCGTCAGTGGACTTCGGGGGCCTCCAGGCCCACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000019081-'58-62,'58-61,59-62=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=1.000 C2=1.000
Domain overlap (PFAM):
C1:
PF0139113=Collagen=PD(6.2=40.0),PF0139113=Collagen=FE(10.2=100)
A:
PF0139113=Collagen=FE(29.5=100)
C2:
PF0139113=Collagen=FE(12.5=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGACGTGGGACTTGGAGC
R:
CTGGAGGCCCCCGAAGTC
Band lengths:
57-138
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]