RnoEX6037778 @ rn6
Exon Skipping
Gene
ENSRNOG00000020579 | Col7a1
Description
collagen type VII alpha 1 chain [Source:RGD Symbol;Acc:1311417]
Coordinates
chr8:117710761-117711100:+
Coord C1 exon
chr8:117710761-117710790
Coord A exon
chr8:117710921-117710992
Coord C2 exon
chr8:117711065-117711100
Length
72 bp
Sequences
Splice sites
3' ss Seq
CAAGCCTGTCTCTACCACAGGGA
3' ss Score
7.39
5' ss Seq
AGGGTAAGC
5' ss Score
9.04
Exon sequences
Seq C1 exon
GTGGATGCCGCCCTTGAATCCAGAGACAAG
Seq A exon
GGAGAGCCTGGACAGGAAGGTCCCCGAGGACCCAAGGGTGACCCTGGCCCCCCTGGAGCCTCTGGAGAAAGG
Seq C2 exon
GGCATTGATGGGCTTCGGGGACCCCCAGGCCCACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000020579-'63-60,'63-59,64-60=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=1.000 C2=1.000
Domain overlap (PFAM):
C1:
PF0139113=Collagen=PU(1.6=10.0)
A:
PF0139113=Collagen=FE(36.5=100)
C2:
PF0139113=Collagen=FE(17.5=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GATGCCGCCCTTGAATCCAG
R:
GTCCCCGAAGCCCATCAATG
Band lengths:
49-121
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]