GgaEX1016990 @ galGal3
Exon Skipping
Gene
ENSGALG00000005811 | COL7A1
Description
NA
Coordinates
chr12:9340082-9340413:+
Coord C1 exon
chr12:9340082-9340123
Coord A exon
chr12:9340220-9340264
Coord C2 exon
chr12:9340369-9340413
Length
45 bp
Sequences
Splice sites
3' ss Seq
ATACTGCTCTCCCTCCCTAGGGC
3' ss Score
12.3
5' ss Seq
AAGGTGAGG
5' ss Score
9.16
Exon sequences
Seq C1 exon
GGTGAGCCGGCGCTGCTGGAGGGCGTGCTGCTGGGTGAACCC
Seq A exon
GGCTCCAAAGGTGCCCGAGGTTTGCCCGGCCCCAAGGGTGAGAAG
Seq C2 exon
GGGGAGCCTGGAGGAGCTGGGGAGCCTGGAGACCCCGGCGAAGAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000005811-'78-83,'78-82,79-83=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=1.000 C2=1.000
Domain overlap (PFAM):
C1:
PF0139113=Collagen=PD(6.2=28.6),PF0139113=Collagen=PU(5.9=21.4)
A:
PF0139113=Collagen=PD(3.9=13.3),PF0139113=Collagen=PU(21.3=86.7)
C2:
PF0139113=Collagen=FE(27.5=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGTGCTGCTGGGTGAACC
R:
ATCTTCGCCGGGGTCTCC
Band lengths:
64-109
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]