BtaEX6095646 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000019081 | COL7A1
Description
collagen, type VII, alpha 1 [Source:HGNC Symbol;Acc:HGNC:2214]
Coordinates
chr22:51881639-51882018:+
Coord C1 exon
chr22:51881639-51881680
Coord A exon
chr22:51881834-51881878
Coord C2 exon
chr22:51881974-51882018
Length
45 bp
Sequences
Splice sites
3' ss Seq
CCTGACCCCTGTATCCGCAGGGA
3' ss Score
9.65
5' ss Seq
AAGGTGAGG
5' ss Score
9.16
Exon sequences
Seq C1 exon
GGCGCCCCTGGAGCCCTTGCTGGAGACCTGGTGGGAGAGCCG
Seq A exon
GGAGCCAAGGGTGACCGAGGACTGCCAGGGCCGCGGGGCGAGAAG
Seq C2 exon
GGTGAAGCTGGCCGTGCGGGGGAGCCTGGAGACCCTGGCGAAGAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000019081-'92-95,'92-94,93-95=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=1.000 C2=1.000
Domain overlap (PFAM):
C1:
PF0139113=Collagen=PD(12.3=57.1),PF0139113=Collagen=PU(7.5=28.6)
A:
PF0139113=Collagen=FE(26.4=100)
C2:
PF0139113=Collagen=FE(26.4=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGGAGACCTGGTGGGAGAG
R:
ATCTTCGCCAGGGTCTCCAG
Band lengths:
68-113
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]