MmuEX6069073 @ mm10
Exon Skipping
Gene
ENSMUSG00000025650 | Col7a1
Description
collagen, type VII, alpha 1 [Source:MGI Symbol;Acc:MGI:88462]
Coordinates
chr9:108975826-108976215:+
Coord C1 exon
chr9:108975826-108975867
Coord A exon
chr9:108976037-108976081
Coord C2 exon
chr9:108976171-108976215
Length
45 bp
Sequences
Splice sites
3' ss Seq
TATGACCCTAATGTCTTTAGGGA
3' ss Score
7.07
5' ss Seq
AAGGTGAGT
5' ss Score
10.47
Exon sequences
Seq C1 exon
GGAGCCCCGGGAGACCTTGCTGGAGCCCTGCTGGGTGAGCCG
Seq A exon
GGAGCCAAAGGTGACCGAGGACTGCCTGGACCACGGGGTGAAAAG
Seq C2 exon
GGTGAAGCTGGCCGTGCAGGAGGACCTGGGGACCCTGGGGAAGAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000025650-'91-123,'91-112,102-123=AN
Average complexity
A_S
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=1.000 C2=1.000
Domain overlap (PFAM):
C1:
PF0139113=Collagen=PD(11.8=57.1),PF0139113=Collagen=PU(7.5=28.6)
A:
PF0139113=Collagen=FE(26.4=100)
C2:
PF0139113=Collagen=FE(26.4=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAGACCTTGCTGGAGCCCT
R:
ATCTTCCCCAGGGTCCCCAG
Band lengths:
77-122
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types