GgaEX1019494 @ galGal3
Exon Skipping
Gene
ENSGALG00000012890 | DGKI
Description
NA
Coordinates
chr1:59637795-59654923:+
Coord C1 exon
chr1:59637795-59637906
Coord A exon
chr1:59640531-59640730
Coord C2 exon
chr1:59654823-59654923
Length
200 bp
Sequences
Splice sites
3' ss Seq
TAATTTCTTTTTCCCCCAAGGCT
3' ss Score
6.32
5' ss Seq
TGAGTGAGT
5' ss Score
6.51
Exon sequences
Seq C1 exon
GTATTGTGCTGGCACAATGCCCTGGGGAAACCCTGGAGATCACAGAGACTTTGAACCTCAGCGCCATGATGATGGCTACATTGAAGTCATTGGGTTCACCATGGCCTCACTG
Seq A exon
GCTGCTCTCCAAGTGGGTGGTCATGGAGAGAGGTTGCATCAGTGCCGTGAGGTGACGCTTTTAACGTACAAGTCTATCCCCATGCAAGTGGATGGTGAACCTTGTCGGTTGGCTCCCTCACTCATTCGCATCTCCTTAAGGAACCAAGCCAACATGGTGCAGAAGAGCAAGAGGAGAACATCCATGCCTTTGTTGAATGA
Seq C2 exon
TCCTCATTCCATCCCTGATCGCCTGCGGATCAGAGTGAACCGGATTAATTTGCAAGAATATGAGGGGCTACATTATGACAAGGAAAAACTCCGTGAAGCTT
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000012890-'21-23,'21-21,22-23=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.219 A=0.134 C2=0.000
Domain overlap (PFAM):
C1:
PF0060914=DAGK_acc=FE(23.4=100)
A:
PF0060914=DAGK_acc=PD(20.9=49.3)
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
GCACAATGCCCTGGGGAAA
R:
AGCTTCACGGAGTTTTTCCTTGT
Band lengths:
201-401
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]