MmuEX6003729 @ mm9
Exon Skipping
Gene
ENSMUSG00000038665 | Dgki
Description
diacylglycerol kinase, iota [Source:MGI Symbol;Acc:MGI:2443430]
Coordinates
chr6:36925147-36962982:-
Coord C1 exon
chr6:36962871-36962982
Coord A exon
chr6:36950042-36950241
Coord C2 exon
chr6:36925147-36925247
Length
200 bp
Sequences
Splice sites
3' ss Seq
TCTTCTCCTTCCTTGGACAGGCT
3' ss Score
9.19
5' ss Seq
TGAGTGAGT
5' ss Score
6.51
Exon sequences
Seq C1 exon
ATATTGTGCTGGCACAATGCCTTGGGGAAACCCTGGAGATCATCATGACTTTGAACCCCAACGTCATGATGACGGCTACATTGAAGTCATTGGATTCACTATGGCCTCTTTG
Seq A exon
GCTGCCCTGCAAGTTGGGGGGCACGGAGAAAGGCTGCACCAGTGTCGGGAAGTGATGCTTCTGACTTACAAGTCCATTCCCATGCAAGTGGACGGGGAGCCATGTCGGTTGGCACCTGCTATGATTCGGATCTCCTTGAGGAATCAGGCCAACATGGTACAGAAGAGCAAGCGGAGAACCTCGATGCCTTTGCTCAATGA
Seq C2 exon
TCCCCAGTCTGTCCCAGATCGCCTGAGGATCCGTGTGAACAAAATCAGTTTACAAGACTATGAAGGACTCCACTATGACAAGGACAAACTCCGGGAAGCTT
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000038665-'25-28,'25-26,26-28=AN
Average complexity
A_C1
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.211 A=0.119 C2=0.029
Domain overlap (PFAM):
C1:
PF0060914=DAGK_acc=FE(23.4=100)
A:
PF0060914=DAGK_acc=PD(20.9=49.3)
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
GCACAATGCCTTGGGGAAACC
R:
TCCCGGAGTTTGTCCTTGTCA
Band lengths:
197-397
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: