MmuEX6003729 @ mm10
Exon Skipping
Gene
ENSMUSG00000038665 | Dgki
Description
diacylglycerol kinase, iota [Source:MGI Symbol;Acc:MGI:2443430]
Coordinates
chr6:36975147-37012982:-
Coord C1 exon
chr6:37012871-37012982
Coord A exon
chr6:37000042-37000241
Coord C2 exon
chr6:36975147-36975247
Length
200 bp
Sequences
Splice sites
3' ss Seq
TCTTCTCCTTCCTTGGACAGGCT
3' ss Score
9.19
5' ss Seq
TGAGTGAGT
5' ss Score
6.51
Exon sequences
Seq C1 exon
ATATTGTGCTGGCACAATGCCTTGGGGAAACCCTGGAGATCATCATGACTTTGAACCCCAACGTCATGATGACGGCTACATTGAAGTCATTGGATTCACTATGGCCTCTTTG
Seq A exon
GCTGCCCTGCAAGTTGGGGGGCACGGAGAAAGGCTGCACCAGTGTCGGGAAGTGATGCTTCTGACTTACAAGTCCATTCCCATGCAAGTGGACGGGGAGCCATGTCGGTTGGCACCTGCTATGATTCGGATCTCCTTGAGGAATCAGGCCAACATGGTACAGAAGAGCAAGCGGAGAACCTCGATGCCTTTGCTCAATGA
Seq C2 exon
TCCCCAGTCTGTCCCAGATCGCCTGAGGATCCGTGTGAACAAAATCAGTTTACAAGACTATGAAGGACTCCACTATGACAAGGACAAACTCCGGGAAGCTT
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000038665-'42-43,'42-39,44-43=AN
Average complexity
A_C1
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.199 A=0.119 C2=0.029
Domain overlap (PFAM):
C1:
PF0060914=DAGK_acc=FE(23.4=100)
A:
PF0060914=DAGK_acc=PD(20.9=49.3)
C2:
NO
Main Skipping Isoform:
ENSMUST00000101532fB8732
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
GCACAATGCCTTGGGGAAACC
R:
TCCCGGAGTTTGTCCTTGTCA
Band lengths:
197-397
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types