GgaEX1019494 @ galGal4
Exon Skipping
Gene
ENSGALG00000012890 | DGKI
Description
diacylglycerol kinase, iota [Source:HGNC Symbol;Acc:HGNC:2855]
Coordinates
chr1:57711343-57728472:+
Coord C1 exon
chr1:57711343-57711454
Coord A exon
chr1:57714080-57714279
Coord C2 exon
chr1:57728372-57728472
Length
200 bp
Sequences
Splice sites
3' ss Seq
TAATTTCTTTTTCCCCCAAGGCT
3' ss Score
6.32
5' ss Seq
TGAGTGAGT
5' ss Score
6.51
Exon sequences
Seq C1 exon
GTATTGTGCTGGCACAATGCCCTGGGGAAACCCTGGAGATCACAGAGACTTTGAACCTCAGCGCCATGATGATGGCTACATTGAAGTCATTGGGTTCACCATGGCCTCACTG
Seq A exon
GCTGCTCTCCAAGTGGGTGGTCATGGAGAGAGGTTGCATCAGTGCCGTGAGGTGACGCTTTTAACGTACAAGTCTATCCCCATGCAAGTGGATGGTGAACCTTGTCGGTTGGCTCCCTCACTCATTCGCATCTCCTTAAGGAACCAAGCCAACATGGTGCAGAAGAGCAAGAGGAGAACATCCATGCCTTTGTTGAATGA
Seq C2 exon
TCCTCATTCCATCCCTGATCGCCTGCGGATCAGAGTGAACCGGATTAATTTGCAAGAATATGAGGGGCTACATTATGACAAGGAAAAACTCCGTGAAGCTT
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000012890-'29-24,'29-22,31-24
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.217 A=0.142 C2=0.000
Domain overlap (PFAM):
C1:
PF0060914=DAGK_acc=FE(23.4=100)
A:
PF0060914=DAGK_acc=PD(20.9=49.3)
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
GCACAATGCCCTGGGGAAA
R:
AGCTTCACGGAGTTTTTCCTTGT
Band lengths:
201-401
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]