RnoEX0027514 @ rn6
Exon Skipping
Gene
ENSRNOG00000026705 | Dgki
Description
diacylglycerol kinase, iota [Source:RGD Symbol;Acc:735049]
Coordinates
chr4:64509477-64546871:-
Coord C1 exon
chr4:64546760-64546871
Coord A exon
chr4:64534736-64534935
Coord C2 exon
chr4:64509477-64509577
Length
200 bp
Sequences
Splice sites
3' ss Seq
TCTTCCCCTTCCTTGGACAGGCT
3' ss Score
9.18
5' ss Seq
TGAGTGAGT
5' ss Score
6.51
Exon sequences
Seq C1 exon
ATATTGTGCTGGCACAATGCCTTGGGGAAACCCTGGAGATCATCATGACTTTGAACCCCAGCGTCATGATGATGGTTACATTGAAGTCATCGGATTCACTATGGCCTCTTTG
Seq A exon
GCTGCCCTGCAAGTCGGGGGCCACGGAGAAAGGTTGCACCAATGTCGGGAAGTGATGCTTCTGACGTACAAGTCCATTCCCATGCAAGTGGACGGGGAGCCATGTAGGTTGGCGCCTGCTATGATTCGGATCTCCTTGAGGAATCAGGCCAACATGGTACAGAAGAGCAAGCGGAGAACCTCAATGCCTTTGCTCAATGA
Seq C2 exon
TCCCCAGTCTGTCCCAGATCGCCTGAGGATCCGCGTGAACAAAATCAGTTTACAAGACTATGAAGGACTCCACTATGACAAGGAGAAACTCCGGGAAGCGT
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000026705-'32-35,'32-32,33-35
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.213 A=0.167 C2=0.049
Domain overlap (PFAM):
C1:
PF0060914=DAGK_acc=FE(23.4=100)
A:
PF0060914=DAGK_acc=PD(20.9=49.3)
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
GCACAATGCCTTGGGGAAACC
R:
ACGCTTCCCGGAGTTTCTCC
Band lengths:
202-402
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]