GgaEX1025093 @ galGal3
Exon Skipping
Gene
ENSGALG00000013124 | FHOD3
Description
NA
Coordinates
chr2:85390429-85529388:+
Coord C1 exon
chr2:85390429-85390535
Coord A exon
chr2:85404515-85404579
Coord C2 exon
chr2:85529321-85529388
Length
65 bp
Sequences
Splice sites
3' ss Seq
CATTTCTCTTCTCTTTTTAGGAG
3' ss Score
11.97
5' ss Seq
TTGGTAAGT
5' ss Score
10.47
Exon sequences
Seq C1 exon
CTTGATGACTGCACTCTGCAATTGTCTCACAATGGTACCTATCTGGACTTAGAATCTACTCTAGCAGAACAAAGAGATGAATTGGAGGGCTTCCAGGAAGATGCTGG
Seq A exon
GAGGGGCAAGAAGCACAGTATAATTTTGAGGACCCAGCTGTCAGTGAGAGTCCATGCCTGTATTG
Seq C2 exon
AAAAACTTTACAATTCCAATGGACGGGAGCTGAGACGTGCACTTTTTTCATTGAAGCAAATATTTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000013124-'2-6,'2-1,3-6=AN
Average complexity
A_C1
Mappability confidence:
100%=100=100%
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg19)
No conservation detected
Mouse
(mm9)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCACTCTGCAATTGTCTCACA
R:
AAAAGTGCACGTCTCAGCTCC
Band lengths:
143-208
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]