BtaEX0014636 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000021581 | FHOD3
Description
formin homology 2 domain containing 3 [Source:HGNC Symbol;Acc:HGNC:26178]
Coordinates
chr24:20941179-21110265:-
Coord C1 exon
chr24:21110159-21110265
Coord A exon
chr24:21095813-21095877
Coord C2 exon
chr24:20941179-20941246
Length
65 bp
Sequences
Splice sites
3' ss Seq
TTGTCTCCTGTCTCCATTAGGCG
3' ss Score
8.37
5' ss Seq
TCGGTGAGT
5' ss Score
11.11
Exon sequences
Seq C1 exon
CTGGACGACTGCACCCTGCAGCTCTCCCACAATGGTACTTACCTGGACTTGGAGGCCACCCTGGCCGAGCAACGGGACGAGTTAGAAGGCTTCCAGGATGACGCTGG
Seq A exon
GCGGGGCAAGAAGCACAGCATCATCCTAAGGACACAGCTGTCTGTGAGGGTCCATGCCTGCATCG
Seq C2 exon
AAAAACTGTACAACTCCACTGGACGAGATTTAAGAAGGGCCCTCTTCTCCCTGAAGCAGATATTTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000021581-'3-8,'3-1,4-8
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.083 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF063718=Drf_GBD=PU(10.9=56.5)
C2:
PF063718=Drf_GBD=FE(18.5=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
CTGGACGACTGCACCCTG
R:
CTGAAATATCTGCTTCAGGGAGA
Band lengths:
175-240
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development