DreEX6071302 @ danRer10
Exon Skipping
Gene
ENSDARG00000063682 | fhod3a
Description
formin homology 2 domain containing 3a [Source:ZFIN;Acc:ZDB-GENE-060503-633]
Coordinates
chr19:718947-737545:+
Coord C1 exon
chr19:718947-719059
Coord A exon
chr19:723310-723374
Coord C2 exon
chr19:737478-737545
Length
65 bp
Sequences
Splice sites
3' ss Seq
CATTTTCTGTGTGTGTTTAGGAG
3' ss Score
9.67
5' ss Seq
TCGGTGAGT
5' ss Score
11.11
Exon sequences
Seq C1 exon
CTCGATGACTGCGCTCTCCAGCTCTCTCACAATGGGGTTTATCTGGATCTGGAGTCCACACTGGACGAGCAGAGAGACGAACTGGAGGGATTCCAGCAGGACGACTGCGCAGG
Seq A exon
GAGGGGAAAGAAGCACAGTGTGATTTTACGAACTCAGCTGAGCGTCCGTGTTCATGCGTGTATCG
Seq C2 exon
AGAAGCTGTATAACTCTAATGGCCGTGACCTGAGGAGGGCGCTGTTTTCCCTTAAACAGATATTCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000063682-'1-3,'1-2,3-3=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.074 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF063718=Drf_GBD=PU(3.9=13.2)
A:
PF063718=Drf_GBD=PU(13.1=69.6)
C2:
PF063718=Drf_GBD=FE(18.0=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
CTCGATGACTGCGCTCTCCAG
R:
GTTTAAGGGAAAACAGCGCCC
Band lengths:
170-235
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]