RnoEX0036019 @ rn6
Exon Skipping
Gene
ENSRNOG00000027230 | Fhod3
Description
formin homology 2 domain containing 3 [Source:RGD Symbol;Acc:2322319]
Coordinates
chr18:16695398-17085390:+
Coord C1 exon
chr18:16695398-16695504
Coord A exon
chr18:16712507-16712571
Coord C2 exon
chr18:17085323-17085390
Length
65 bp
Sequences
Splice sites
3' ss Seq
TTGTTTCCTGTCTCCCTCAGGCG
3' ss Score
10.93
5' ss Seq
TTGGTGAGT
5' ss Score
9.27
Exon sequences
Seq C1 exon
CTCGATGACTGTACCCTGCAGCTGTCCCACAATGGTGCCTACCTCGATCTGGAGGCCACGCTGGCGGAACAGCGGGATGAGCTGGAAGGCTTCCAGGATGACACAGG
Seq A exon
GCGGGGCAAGAAGAACAGCATTATCCTGAGGACACAGCTGTCTGTGAGGGTCCATGCTTGCATTG
Seq C2 exon
AAAAGCTGTACAACTCCACCGGCCGAGATCTAAGAAGGGCCCTTTTCTCGCTGAAGCAGATATTTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000027230-'7-9,'7-1,8-9
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.167 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF063718=Drf_GBD=PU(8.6=33.3)
A:
PF063718=Drf_GBD=FE(15.7=100)
C2:
PF063718=Drf_GBD=FE(15.7=100)
Other Skipping Isoforms:
NA
Associated events
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
CTCGATGACTGTACCCTGCAG
R:
TCTGCTTCAGCGAGAAAAGGG
Band lengths:
167-232
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]