GgaEX1025093 @ galGal4
Exon Skipping
Gene
ENSGALG00000013124 | FHOD3
Description
formin homology 2 domain containing 3 [Source:HGNC Symbol;Acc:HGNC:26178]
Coordinates
chr2:83129303-83268260:+
Coord C1 exon
chr2:83129303-83129409
Coord A exon
chr2:83143389-83143453
Coord C2 exon
chr2:83268193-83268260
Length
65 bp
Sequences
Splice sites
3' ss Seq
CATTTCTCTTCTCTTTTTAGGAG
3' ss Score
11.97
5' ss Seq
TTGGTAAGT
5' ss Score
10.47
Exon sequences
Seq C1 exon
CTTGATGACTGCACTCTGCAATTGTCTCACAATGGTACCTATCTGGACTTAGAATCTACTCTAGCAGAACAAAGAGATGAATTGGAGGGCTTCCAGGAAGATGCTGG
Seq A exon
GAGGGGCAAGAAGCACAGTATAATTTTGAGGACCCAGCTGTCAGTGAGAGTCCATGCCTGTATTG
Seq C2 exon
AAAAACTTTACAATTCCAATGGACGGGAGCTGAGACGTGCACTTTTTTCATTGAAGCAAATATTTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000013124-'4-10,'4-1,5-10
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.028 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF063718=Drf_GBD=PU(7.2=27.8)
A:
PF063718=Drf_GBD=FE(15.9=100)
C2:
PF063718=Drf_GBD=FE(15.9=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
GCACTCTGCAATTGTCTCACA
R:
AAAAGTGCACGTCTCAGCTCC
Band lengths:
143-208
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]