DreEX0032811 @ danRer10
Exon Skipping
Gene
ENSDARG00000061904 | fhod3b
Description
formin homology 2 domain containing 3b [Source:ZFIN;Acc:ZDB-GENE-081028-61]
Coordinates
chr16:18952723-19123613:-
Coord C1 exon
chr16:19123507-19123613
Coord A exon
chr16:19091655-19091719
Coord C2 exon
chr16:18952723-18952790
Length
65 bp
Sequences
Splice sites
3' ss Seq
TTTTTATGTTTGTTCCTCAGGAG
3' ss Score
10.06
5' ss Seq
TAGGTAAGT
5' ss Score
9.66
Exon sequences
Seq C1 exon
CTTGATGACTGTGCTTTGCAGTTGTCTCATAATGGCAGTTATCTGGACCTGGAGTCCACCTTGGCTGAGCAGAAAGATGAACTTGAAGGCTTTCAGGAGGATGGAGG
Seq A exon
GAGAGGAAAGAAGCACAGTATTGTACTTAGAACACAGCTGTCTGTCAGAGTCCATGCCTGCATAG
Seq C2 exon
AAAAGCTGTACAACTCGACGGGTCGTGAGCTACGAAGAGCACTGTTCTCTCTCAAGCAAATCTTCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000061904_CASSETTE3
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.167 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF063718=Drf_GBD=PU(11.1=44.4)
A:
PF063718=Drf_GBD=FE(15.3=100)
C2:
PF063718=Drf_GBD=FE(15.3=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
CTTGATGACTGTGCTTTGCAGTT
R:
TTTGCTTGAGAGAGAACAGTGCT
Band lengths:
167-232
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]