MmuEX0019232 @ mm9
Exon Skipping
Gene
ENSMUSG00000034295 | Fhod3
Description
formin homology 2 domain containing 3 [Source:MGI Symbol;Acc:MGI:1925847]
Coordinates
chr18:24912720-25056205:+
Coord C1 exon
chr18:24912720-24912826
Coord A exon
chr18:24928984-24929048
Coord C2 exon
chr18:25056138-25056205
Length
65 bp
Sequences
Splice sites
3' ss Seq
TTGTTTCCTGTCTCTCTCAGGCG
3' ss Score
10.66
5' ss Seq
TTGGTGAGT
5' ss Score
9.27
Exon sequences
Seq C1 exon
CTCGATGACTGTACCCTGCAGCTGTCCCACAATGGCGCCTACCTGGATCTGGAGGCCACGCTGGCGGAACAGCGGGATGAGCTAGAAGGCTTCCAGGATGACACAGG
Seq A exon
GCGGGGCAAGAAGAACAGCATTATTCTGAGGACACAGCTGTCTGTGAGGGTCCATGCCTGCATTG
Seq C2 exon
AAAAGCTGTACAACTCCAGTGGCCGAGATCTAAGAAGGGCCCTTTTCTCACTGAAGCAGATATTTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000034295-'1-3,'1-1,3-3
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.167 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF063718=Drf_GBD=PU(3.8=13.9)
A:
PF063718=Drf_GBD=FE(16.5=100)
C2:
PF063718=Drf_GBD=FE(16.5=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTCGATGACTGTACCCTGCAG
R:
TCTGCTTCAGTGAGAAAAGGGC
Band lengths:
167-232
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: