HsaEX0025771 @ hg19
Exon Skipping
Gene
ENSG00000134775 | FHOD3
Description
formin homology 2 domain containing 3 [Source:HGNC Symbol;Acc:26178]
Coordinates
chr18:33935502-34081962:+
Coord C1 exon
chr18:33935502-33935608
Coord A exon
chr18:33952643-33952707
Coord C2 exon
chr18:34081895-34081962
Length
65 bp
Sequences
Splice sites
3' ss Seq
TTTGTCTCCTGTCTCGTTAGGCG
3' ss Score
8.28
5' ss Seq
TCGGTGAGT
5' ss Score
11.11
Exon sequences
Seq C1 exon
CTGGATGACTGTACTCTGCAGCTCTCTCACAATGGCGCCTACCTGGATTTGGAGGCCACCCTGGCAGAGCAGCGGGATGAGTTGGAAGGCTTCCAGGATGACGCCGG
Seq A exon
GCGGGGCAAGAAGCACAGCATCATCCTAAGGACGCAGCTGTCTGTGAGGGTCCATGCCTGCATCG
Seq C2 exon
AAAAACTATACAACTCCAGCGGACGAGATTTGAGAAGGGCCCTCTTCTCCCTGAAGCAGATATTTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000134775-'2-4,'2-2,3-4
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.069 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF063718=Drf_GBD=PU(0.8=2.8)
A:
PF063718=Drf_GBD=FE(17.1=100)
C2:
PF063718=Drf_GBD=FE(17.1=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGATGACTGTACTCTGCAGCT
R:
CTGAAATATCTGCTTCAGGGAGA
Band lengths:
174-239
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- The Cancer Genome Atlas (TCGA)
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)