GgaEX1034809 @ galGal4
Exon Skipping
Gene
ENSGALG00000004370 | MAP2K6
Description
mitogen-activated protein kinase kinase 6 [Source:HGNC Symbol;Acc:HGNC:6846]
Coordinates
chr18:8260526-8280531:+
Coord C1 exon
chr18:8260526-8260895
Coord A exon
chr18:8279233-8279299
Coord C2 exon
chr18:8280483-8280531
Length
67 bp
Sequences
Splice sites
3' ss Seq
GCCTCTTTCTTGTTTCGTAGGCA
3' ss Score
10.5
5' ss Seq
CACGTAAGT
5' ss Score
10.16
Exon sequences
Seq C1 exon
CAGCTCCCAGAGGGCAGTGCGGCGGCCGTCGGCAGCGCGCCTGCGCACTGCGCCCCCCAGCTCCAAGTTTGGAGCTGCGAGCTGCCAGCCCTGGCCCATCATGTAGGTGCAGCAGAGCCTTCCCCAGCACTGCAAGCAGGGGGGGAGGTTTTCCCCCGCGCTGCAAGCTGCCCTGCAAAGTGTGCAATTGCACGGCCCCCCGCTGCAAGGAGAGCTGCTGCAGCGAGTCAGGAAAACTCCAGTTGCATGAAGATTGAGCGCTTGCAGTTTGCATCTTTGTTGCAAAACTAGCTCCAGAAGAGAGGCAAGGCAAAGTCTTTTGTGCTCCCCTCCCCCATCAAAGCAAAGGGGAAAATGTCTCAGTCGAGAG
Seq A exon
GCAAAAAGAGAAACCCTGGGCTGAAAATTCCTAAAGAAGCATTTGAGCAACCACAGACGAGCTCCAC
Seq C2 exon
GCCACCCAGGGATCTAGACTCCAAAGCCTGCATCTCTATTGGAGAGGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000004370-'1-2,'1-1,3-2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=1.000 C2=0.471
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
CTGCAGCGAGTCAGGAAAACT
R:
GGAGTCTAGATCCCTGGGTGG
Band lengths:
175-242
Functional annotations
There are 1 annotated functions for this event
PMID: 26538579
Encodes an experimentally validated Eukaryotic Linear Motif (ELM). Method: bimolecular fluorescence complementation, filter binding. ELM ID: ELMI003289; ELM sequence: KKRNPGLKI; Overlap: FULL
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]