GgaEX1042931 @ galGal3
Exon Skipping
Gene
ENSGALG00000007559 | E1BZW8_CHICK
Description
NA
Coordinates
chr2:16025403-16027183:-
Coord C1 exon
chr2:16027136-16027183
Coord A exon
chr2:16026412-16026476
Coord C2 exon
chr2:16025403-16025526
Length
65 bp
Sequences
Splice sites
3' ss Seq
CCTGCTTTTTCTTCGTGCAGATG
3' ss Score
10.56
5' ss Seq
GCGGTAAGT
5' ss Score
11.37
Exon sequences
Seq C1 exon
CCGCCGGCGCACGGCCTACGCGGACCGCCGCCCGCCCTGCGCGCCGCG
Seq A exon
ATGTGTCACTTTCCCCAAAGAAGCTCAGTATGGCCATTTCCAAAACTGTGTAGTATACCTTGGCG
Seq C2 exon
GTTCCATCATACAAGTACAGCCCTCATGTGCAGCTGCAGTAAGACAGTTAGTGATGAAAAATACCAAGACCCTTTTCAACTTGGCAGAAAAGACTTGAAGAATCTCTATGAGGATATTAAAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000007559-'0-1,'0-0,2-1=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=NA A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm9)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]