RnoEX0064701 @ rn6
Exon Skipping
Gene
ENSRNOG00000048849 | Pdss1
Description
decaprenyl diphosphate synthase subunit 1 [Source:RGD Symbol;Acc:2319976]
Coordinates
chr17:90065875-90071408:-
Coord C1 exon
chr17:90071261-90071408
Coord A exon
chr17:90066412-90066476
Coord C2 exon
chr17:90065875-90065995
Length
65 bp
Sequences
Splice sites
3' ss Seq
TTCATACTTTTGTTTTACAGATA
3' ss Score
10.58
5' ss Seq
GCAGTAAGT
5' ss Score
9.07
Exon sequences
Seq C1 exon
CTTTCAGACTCGTACCATGGCTCTGCGCTGGTCATGCTGGCGGCGCCGCTGCTCCTGGAGGCCGGCGCTGGTCGGGAGCCCGCGGCCGGCACGCCCTGGCTGTGCAGGACCGCTCGGGACACGCGCCGCCTCGGACACCCGCGCGCAG
Seq A exon
ATACCCTATTTTAGTCTTTTGAAGATTTTAACATCTGCCTCCCCAAATATGCATAGTATATCGCA
Seq C2 exon
GTTTCATCAAAGGACACCAGCAATGTGCTGTTGTAGTCAAACTCAGAGTGGTGAGAAATACAGTGATCCTTTTAAACTTGGCTGGAGAGACTTGAAAGGTCTATATGAAGACATTAGAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000048849_CASSETTE3
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.136 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCAGACTCGTACCATGGCTCT
R:
GCACATTGCTGGTGTCCTTTG
Band lengths:
173-238
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]