BtaEX6063914 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000006529 | PDSS1
Description
Bos taurus prenyl (decaprenyl) diphosphate synthase, subunit 1 (PDSS1), mRNA. [Source:RefSeq mRNA;Acc:NM_001100331]
Coordinates
chr13:18216330-18224123:-
Coord C1 exon
chr13:18223954-18224123
Coord A exon
chr13:18217543-18217607
Coord C2 exon
chr13:18216330-18216450
Length
65 bp
Sequences
Splice sites
3' ss Seq
CTTAATATTTTATTTTATAGATG
3' ss Score
8.21
5' ss Seq
ACGGTAAGT
5' ss Score
11.81
Exon sequences
Seq C1 exon
AGACTCGGACCATGGCCTCGTGCTGGTGGCCGTGGCGGTGGCGGCGCGGCTGCTCTTGGAGGCCGGCGGCGCGGAGCCCCGGGCCCAACTCCGCCGGCCGCGCGGCACTGTATGCGCCGCGGGCTGCCGCCGTCGCCGCCGCTGCCACTGTCGCCGTCGCCCGCGCGCAG
Seq A exon
ATGTCCTATTGTAGTCTTATGAAGAGTTTAACATCTGCCTTTCGAAATATGTATGGTGTATCACG
Seq C2 exon
GTTCCATCACACGACGCCAGTAGCTTGCTGCTTCAGTGAAACACTGAGCGGTGAGAAGTACACCGACCCTTTTAAGATTGGCTGGAGAGACTTGAAAGGTCTCTATGAGGACATCAGGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000006529-'0-2,'0-0,3-2=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CATGGCCTCGTGCTGGTG
R:
TACTGGCGTCGTGTGATGGAA
Band lengths:
182-247
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]